From 9957e9eea1d77d6f1a07a4c443e5520a8923f36e Mon Sep 17 00:00:00 2001
From: Rogan Grant <rogangrant2022@u.northwestern.edu>
Date: Wed, 28 Jul 2021 13:11:02 -0500
Subject: [PATCH] Version 1 of custom config with queue-switching for long jobs
 and module loading

---
 conf/nu_genomics.config | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)
 create mode 100644 conf/nu_genomics.config

diff --git a/conf/nu_genomics.config b/conf/nu_genomics.config
new file mode 100644
index 0000000..67465cb
--- /dev/null
+++ b/conf/nu_genomics.config
@@ -0,0 +1,31 @@
+//Profile config names for nf-core/configs
+params {
+  config_profile_description = 'Northwestern University Quest HPC (Genomics Nodes) config provided by nf-core/configs'
+  config_profile_contact = 'Rogan Grant / Janna Nugent (@RoganGrant, @NUjon)'
+  config_profile_url = 'https://www.it.northwestern.edu/research/user-services/quest/'
+}
+
+singularity {
+  enabled = true
+  autoMounts = true
+  queue = {task.time < 48.h ? 'genomics' : 'genomicslong'}
+  clusterOptions = '-A b1042'
+  cacheDir = "/projects/b1042/singularity_cache"
+}
+
+process {
+  beforeScript = 'module load singularity/latest graphviz/2.40.1'
+  executor = 'slurm'
+}
+
+executor {
+  submitRateLimit = '1sec'
+}
+
+params {
+  max_memory = 190.GB
+  max_cpus = 40
+  max_time = 240.h
+  igenomes_base = "/projects/genomicsshare/igenomes" #pending
+
+}
\ No newline at end of file