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Merge pull request #428 from nf-core/vsc_ugent/limit_queuesize

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vsc_ugent: limit queuesize
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Matthias De Smet 2022-10-13 08:53:27 +02:00 committed by GitHub
commit 9a1e629b7b
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1 changed files with 4 additions and 2 deletions
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conf/vsc_ugent.config
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@ -7,9 +7,11 @@ workDir = "$scratch_dir/work"
// Perform work directory cleanup when the run has succesfully completed // Perform work directory cleanup when the run has succesfully completed
// cleanup = true // cleanup = true
// Reduce the job submit rate to about 5 per second, this way the server won't be bombarded with jobs // Reduce the job submit rate to about 3 per second, this way the server won't be bombarded with jobs
// Limit queueSize to keep job rate under control and avoid timeouts
executor { executor {
submitRateLimit = '3 sec' submitRateLimit = '3 sec'
queueSize = 50
} }
// Specify that singularity should be used and where the cache dir will be for the images // Specify that singularity should be used and where the cache dir will be for the images
@ -114,4 +116,4 @@ profiles {
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }
} }