diff --git a/conf/czbiohub.config b/conf/czbiohub.config index 1c788b9..d51c6f2 100644 --- a/conf/czbiohub.config +++ b/conf/czbiohub.config @@ -47,59 +47,59 @@ params { // GENCODE GTF and fasta files genomes { 'GRCh38' { - fasta = "${params.gencode_base}/human/v29/GRCh38.p12.genome.fa.gz" - gtf = "${params.gencode_base}/human/v29/gencode.vM19.annotation.gtf.gz" + fasta = "${params.gencode_base}/human/v29/GRCh38.p12.genome.fa" + gtf = "${params.gencode_base}/human/v29/gencode.vM19.annotation.gtf" } 'GRCm38' { - fasta = "${params.gencode_base}/mouse/vM19/GRCm38.p6.genome.fa.gz" - gtf = "${params.gencode_base}/mouse/vM19/gencode.vM19.annotation.gtf.gz" + fasta = "${params.gencode_base}/mouse/vM19/GRCm38.p6.genome.fa" + gtf = "${params.gencode_base}/mouse/vM19/gencode.vM19.annotation.gtf" } } transgenes { 'ChR2' { - fasta = "${params.transgenes_base}/ChR2/ChR2.fa.gz" - gtf = "${params.transgenes_base}/ChR2/ChR2.gtf.gz" + fasta = "${params.transgenes_base}/ChR2/ChR2.fa" + gtf = "${params.transgenes_base}/ChR2/ChR2.gtf" } 'Cre' { - fasta = "${params.transgenes_base}/Cre/Cre.fa.gz" - gtf = "${params.transgenes_base}/Cre/Cre.gtf.gz" + fasta = "${params.transgenes_base}/Cre/Cre.fa" + gtf = "${params.transgenes_base}/Cre/Cre.gtf" } 'ERCC' { - fasta = "${params.transgenes_base}/ERCC92/ERCC92.fa.gz" - gtf = "${params.transgenes_base}/ERCC92/ERCC92.gtf.gz" + fasta = "${params.transgenes_base}/ERCC92/ERCC92.fa" + gtf = "${params.transgenes_base}/ERCC92/ERCC92.gtf" } 'GCaMP6m' { - fasta = "${params.transgenes_base}/GCaMP6m/GCaMP6m.fa.gz" - gtf = "${params.transgenes_base}/GCaMP6m/GCaMP6m.gtf.gz" + fasta = "${params.transgenes_base}/GCaMP6m/GCaMP6m.fa" + gtf = "${params.transgenes_base}/GCaMP6m/GCaMP6m.gtf" } 'GFP' { - fasta = "${params.transgenes_base}/Gfp/Gfp.fa.gz" - gtf = "${params.transgenes_base}/Gfp/Gfp.gtf.gz" + fasta = "${params.transgenes_base}/Gfp/Gfp.fa" + gtf = "${params.transgenes_base}/Gfp/Gfp.gtf" } 'NpHR' { - fasta = "${params.transgenes_base}/NpHR/NpHR.fa.gz" - gtf = "${params.transgenes_base}/NpHR/NpHR.gtf.gz" + fasta = "${params.transgenes_base}/NpHR/NpHR.fa" + gtf = "${params.transgenes_base}/NpHR/NpHR.gtf" } 'RCaMP' { - fasta = "${params.transgenes_base}/RCaMP/RCaMP.fa.gz" - gtf = "${params.transgenes_base}/RCaMP/RCaMP.gtf.gz" + fasta = "${params.transgenes_base}/RCaMP/RCaMP.fa" + gtf = "${params.transgenes_base}/RCaMP/RCaMP.gtf" } 'RGECO' { - fasta = "${params.transgenes_base}/RGECO/RGECO.fa.gz" - gtf = "${params.transgenes_base}/RGECO/RGECO.gtf.gz" + fasta = "${params.transgenes_base}/RGECO/RGECO.fa" + gtf = "${params.transgenes_base}/RGECO/RGECO.gtf" } 'Tdtom' { - fasta = "${params.transgenes_base}/Tdtom/Tdtom.fa.gz" - gtf = "${params.transgenes_base}/Tdtom/Tdtom.gtf.gz" + fasta = "${params.transgenes_base}/Tdtom/Tdtom.fa" + gtf = "${params.transgenes_base}/Tdtom/Tdtom.gtf" } 'Car-T' { - fasta = "${params.transgenes_base}/car-t/car-t.fa.gz" - gtf = "${params.transgenes_base}/car-t/car-t.gtf.gz" + fasta = "${params.transgenes_base}/car-t/car-t.fa" + gtf = "${params.transgenes_base}/car-t/car-t.gtf" } 'zsGreen' { - fasta = "${params.transgenes_base}/zsGreen/zsGreen.fa.gz" - gtf = "${params.transgenes_base}/zsGreen/zsGreen.gtf.gz" + fasta = "${params.transgenes_base}/zsGreen/zsGreen.fa" + gtf = "${params.transgenes_base}/zsGreen/zsGreen.gtf" } } }