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2 changed files with 27 additions and 0 deletions
25
conf/pipeline/sarek/cfc.config
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25
conf/pipeline/sarek/cfc.config
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// Profile config names for nf-core/configs
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'Friederike Hanssen (@FriederikeHanssen)'
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config_profile_description = 'nf-core/sarek CFC profile provided by nf-core/configs'
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}
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// Specific nf-core/sarek process configuration
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process {
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withName:'StrelkaSingle|Strelka|StrelkaBP|MantaSingle|Manta' {
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memory = 59.GB
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cpus = 20
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}
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withName:'MSIsensor_scan|MSIsensor_msi' {
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memory = 55.GB
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}
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withName:BamQC {
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memory = 372.GB
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}
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withName:MapReads{
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cpus = 20
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memory = 59.GB
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}
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}
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@ -12,5 +12,7 @@ profiles {
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munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" }
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uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" }
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icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" }
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cfc { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
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cfc_dev { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
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eddie { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/eddie.config" }
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}
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