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Merge pull request #210 from FriederikeHanssen/cfc_sarek

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Cfc sarek
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FriederikeHanssen 2021-04-23 17:22:01 +02:00 committed by GitHub
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25
conf/pipeline/sarek/cfc.config Normal file
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@ -0,0 +1,25 @@
// Profile config names for nf-core/configs
params {
// Specific nf-core/configs params
config_profile_contact = 'Friederike Hanssen (@FriederikeHanssen)'
config_profile_description = 'nf-core/sarek CFC profile provided by nf-core/configs'
}
// Specific nf-core/sarek process configuration
process {
withName:'StrelkaSingle|Strelka|StrelkaBP|MantaSingle|Manta' {
memory = 59.GB
cpus = 20
}
withName:'MSIsensor_scan|MSIsensor_msi' {
memory = 55.GB
}
withName:BamQC {
memory = 372.GB
}
withName:MapReads{
cpus = 20
memory = 59.GB
}
}

2
pipeline/sarek.config
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@ -12,5 +12,7 @@ profiles {
munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" } munin { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/munin.config" }
uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" } uppmax { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/uppmax.config" }
icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" } icr_davros { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/icr_davros.config" }
cfc { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
cfc_dev { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/cfc.config" }
eddie { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/eddie.config" } eddie { includeConfig "${params.custom_config_base}/conf/pipeline/sarek/eddie.config" }
} }