millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 16:29:55 +00:00
Code Issues Releases Packages Activity

Merge branch 'master' into master

Browse source
This commit is contained in:
Alexander Peltzer 2019-11-26 15:13:32 +01:00 committed by GitHub
commit 9e6e4343d7
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 5 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
.github/workflows/main.yml vendored
View file

@ -16,7 +16,8 @@ jobs:
needs: test_all_profiles needs: test_all_profiles
strategy: strategy:
matrix: matrix:
profile: ['awsbatch', 'bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga', 'cfc', 'crick', 'denbi_qbic', 'genotoul', 'genouest', 'gis', 'hebbe', 'kraken', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hex', 'uppmax_devel', 'uppmax', 'uzh'] profile: ['awsbatch', 'bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga', 'cfc', 'crick', 'denbi_qbic', 'genotoul', 'genouest', 'gis', 'hebbe', 'kraken', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hex', 'uppmax_devel', 'uppmax', 'uzh']
steps: steps:
- uses: actions/checkout@v1 - uses: actions/checkout@v1
- name: Install Nextflow - name: Install Nextflow

3
bin/cchecker.py
View file

@ -48,6 +48,9 @@ def check_config(Config, Github):
###Check Github Config now ###Check Github Config now
tests = set() tests = set()
###Ignore these profiles
ignore_me = ['czbiohub_aws_highpriority', 'czbiohub_aws']
tests.update(ignore_me)
with open(Github, 'r') as ghfile: with open(Github, 'r') as ghfile:
for line in ghfile: for line in ghfile:
if re.search('profile: ', line): if re.search('profile: ', line):