From a0d42f51536cbc21323c95afce0f19e9e7c1aa4a Mon Sep 17 00:00:00 2001 From: ameynert Date: Wed, 24 Mar 2021 13:55:31 +0000 Subject: [PATCH] Fixed code blocks for markdown linting --- docs/eddie.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/docs/eddie.md b/docs/eddie.md index c51f7c1..283e21f 100644 --- a/docs/eddie.md +++ b/docs/eddie.md @@ -27,6 +27,7 @@ module avail igmm/apps/nextflow ``` To load the most recent version: + ```bash module load igmm/apps/nextflow ``` @@ -64,7 +65,7 @@ qlogin -l h_vmem=8G If your eddie terminal disconnects your Nextflow job will stop. You can run Nextflow as a bash script on the command line using `nohup` to prevent this. -``` +```bash nohup ./nextflow_run.sh & ``` @@ -73,16 +74,19 @@ nohup ./nextflow_run.sh & Wild west nodes on eddie can be accessed via ssh (node2c15, node2c16, node3g22). To run Nextflow on one of these nodes, do it within a [screen session](https://linuxize.com/post/how-to-use-linux-screen/). Start a new screen session. + ```bash screen -S ``` List existing screen sessions + ```bash screen -ls ``` Reconnect to an existing screen session + ```bash screen -r ```