From 20deaf3b46d10a611a16c5c8f97a84608242240d Mon Sep 17 00:00:00 2001
From: Alexander Peltzer <alex.peltzer@gmail.com>
Date: Wed, 6 Mar 2019 12:59:54 +0100
Subject: [PATCH 1/2] Provide fix for online issues

---
 nfcore_custom.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nfcore_custom.config b/nfcore_custom.config
index e26116b..70fccd4 100644
--- a/nfcore_custom.config
+++ b/nfcore_custom.config
@@ -8,7 +8,7 @@
  * name here.
  */
 
-config_base = "${params.custom_config_base}/conf"
+config_base = params.custom_config_base ?: "${params.custom_config_base}/conf" : "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}/conf"
 
 profiles {
   binac        { includeConfig "${config_base}/binac.config" }

From ad47005fb6463d8c9c7133139560543dd88f4289 Mon Sep 17 00:00:00 2001
From: Sven F <sven.fillinger@qbic.uni-tuebingen.de>
Date: Wed, 6 Mar 2019 13:13:52 +0100
Subject: [PATCH 2/2] Update nfcore_custom.config

Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
---
 nfcore_custom.config | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nfcore_custom.config b/nfcore_custom.config
index 70fccd4..db0219a 100644
--- a/nfcore_custom.config
+++ b/nfcore_custom.config
@@ -8,7 +8,8 @@
  * name here.
  */
 
-config_base = params.custom_config_base ?: "${params.custom_config_base}/conf" : "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}/conf"
+default_uri = "https://raw.githubusercontent.com/nf-core/configs/master/conf"
+config_base = "${params.custom_config_base ?: default_uri}"
 
 profiles {
   binac        { includeConfig "${config_base}/binac.config" }