1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-09-21 06:02:03 +00:00

Update docs/vsc_ugent.md

Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
This commit is contained in:
nvnieuwk 2022-05-20 09:41:02 +02:00 committed by GitHub
parent dba85e53fa
commit a3583262c2
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23

View file

@ -28,7 +28,7 @@ export SINGULARITY_CACHEDIR=$VSC_SCRATCH_VO_USER/.singularity
All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.
The config contains a `cleanup` command that removes the `work/` directory automatically once the pipeline has completed successfully. If the run does not complete successfully then the `work/` dir should be removed manually to save storage space.
You can also add several TORQUE options to the SLURM/PBS script. More about this on this [link](http://hpcugent.github.io/vsc_user_docs/pdf/intro-HPC-linux-gent.pdf#appendix.B).
You can also add several TORQUE options to the PBS script. More about this on this [link](http://hpcugent.github.io/vsc_user_docs/pdf/intro-HPC-linux-gent.pdf#appendix.B).
To submit your job to the cluster by using the following command: