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Update docs/vsc_ugent.md
Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
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@ -28,7 +28,7 @@ export SINGULARITY_CACHEDIR=$VSC_SCRATCH_VO_USER/.singularity
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All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.
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The config contains a `cleanup` command that removes the `work/` directory automatically once the pipeline has completed successfully. If the run does not complete successfully then the `work/` dir should be removed manually to save storage space.
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You can also add several TORQUE options to the SLURM/PBS script. More about this on this [link](http://hpcugent.github.io/vsc_user_docs/pdf/intro-HPC-linux-gent.pdf#appendix.B).
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You can also add several TORQUE options to the PBS script. More about this on this [link](http://hpcugent.github.io/vsc_user_docs/pdf/intro-HPC-linux-gent.pdf#appendix.B).
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To submit your job to the cluster by using the following command:
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