diff --git a/conf/czbiohub_aws.config b/conf/czbiohub_aws.config index 1dd8da2..576e49e 100644 --- a/conf/czbiohub_aws.config +++ b/conf/czbiohub_aws.config @@ -24,7 +24,7 @@ process { errorStrategy = 'ignore' } -workDir = "s3://czb-nextflow/intermediates/" +//workDir = "s3://czb-nextflow/intermediates/" aws.region = 'us-west-2' executor.awscli = '/home/ec2-user/miniconda/bin/aws' diff --git a/nfcore_custom.config b/nfcore_custom.config index eb0abf4..4180c1d 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -18,7 +18,8 @@ profiles { ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" } cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" } crick { includeConfig "${params.custom_config_base}/conf/crick.config" } - + czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" } + czbiohub_aws_highpriority { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config"; includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config" } gis { includeConfig "${params.custom_config_base}/conf/gis.config" } hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" } mendel { includeConfig "${params.custom_config_base}/conf/mendel.config" } @@ -29,7 +30,6 @@ profiles { shh { includeConfig "${params.custom_config_base}/conf/shh.config" } uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" } uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" } - uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax_devel.config" } uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" } }