From a692ded933e3871a07eda1ceee2db51138801905 Mon Sep 17 00:00:00 2001
From: drpatelh <drhpatel@gmail.com>
Date: Wed, 31 Jul 2019 23:30:51 +0100
Subject: [PATCH] Remove workDir in czbiohub

---
 conf/czbiohub_aws.config | 2 +-
 nfcore_custom.config     | 4 ++--
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/conf/czbiohub_aws.config b/conf/czbiohub_aws.config
index 1dd8da2..576e49e 100644
--- a/conf/czbiohub_aws.config
+++ b/conf/czbiohub_aws.config
@@ -24,7 +24,7 @@ process {
   errorStrategy = 'ignore'
 }
 
-workDir = "s3://czb-nextflow/intermediates/"
+//workDir = "s3://czb-nextflow/intermediates/"
 
 aws.region = 'us-west-2'
 executor.awscli = '/home/ec2-user/miniconda/bin/aws'
diff --git a/nfcore_custom.config b/nfcore_custom.config
index eb0abf4..4180c1d 100644
--- a/nfcore_custom.config
+++ b/nfcore_custom.config
@@ -18,7 +18,8 @@ profiles {
   ccga_dx      { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
   cfc          { includeConfig "${params.custom_config_base}/conf/cfc.config" }
   crick        { includeConfig "${params.custom_config_base}/conf/crick.config" }
-
+  czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
+  czbiohub_aws_highpriority { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config"; includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config" }
   gis          { includeConfig "${params.custom_config_base}/conf/gis.config" }
   hebbe        { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
   mendel       { includeConfig "${params.custom_config_base}/conf/mendel.config" }
@@ -29,7 +30,6 @@ profiles {
   shh          { includeConfig "${params.custom_config_base}/conf/shh.config" }
   uct_hex      { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
   uppmax       { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
-  uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax_devel.config" }
   uzh          { includeConfig "${params.custom_config_base}/conf/uzh.config" }
 }