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Linting fixes

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James Fellows Yates 2021-02-14 17:58:50 +01:00
parent 537f52a640
commit a78aac327d
2 changed files with 4 additions and 5 deletions
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docs/eva.md
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@ -26,4 +26,3 @@ Note the following characteristics of this profile:
### debug ### debug
This simple profile just turns off automatic clean up of intermediate files. This can be useful for debugging. Specify e.g. with `-profile eva,archgen` This simple profile just turns off automatic clean up of intermediate files. This can be useful for debugging. Specify e.g. with `-profile eva,archgen`

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docs/pipeline/eager/eva.md
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@ -26,9 +26,9 @@ Specific configurations for eva has been made for eager.
#### Human Pop-Gen #### Human Pop-Gen
* `human`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16500, -n 0.01`) - `human`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16500, -n 0.01`)
#### Pathogen #### Pathogen
* `pathogen_loose`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16 -n 0.01`) - `pathogen_loose`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 16 -n 0.01`)
* `pathogen_strict`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 32, -n 0.1`) - `pathogen_strict`: optimised for mapping of human aDNA reads (i.e. bwa aln defaults as `-l 32, -n 0.1`)