diff --git a/docs/pipeline/eager/crick.md b/docs/pipeline/eager/crick.md new file mode 100755 index 0000000..2c56677 --- /dev/null +++ b/docs/pipeline/eager/crick.md @@ -0,0 +1,24 @@ +# nf-core/configs: Crick eager specific configuration + +Extra specific configuration for eager pipeline + +## Usage + +To use, run the pipeline with `-profile crick`. + +This will download and launch the eager specific [`crick.config`](../../../conf/pipeline/eager/crick.config) which is adapted to data generated at the Crick and +processed on the Crick's HPC. + +Example: `nextflow run nf-core/eager -profile crick` + +#### screening + +- Low coverage data. + +#### production + +- High coverage data. + +#### external + +- External higher coverage data. diff --git a/pipeline/eager.config b/pipeline/eager.config index 82fd071..ad9ec2f 100644 --- a/pipeline/eager.config +++ b/pipeline/eager.config @@ -12,4 +12,5 @@ profiles { eva { includeConfig "${params.custom_config_base}/conf/pipeline/eager/eva.config" } maestro { includeConfig "${params.custom_config_base}/conf/pipeline/eager/maestro.config" } mpcdf { includeConfig "${params.custom_config_base}/conf/pipeline/eager/mpcdf.config" } + crick { includeConfig "${params.custom_config_base}/conf/pipeline/eager/crick.config" } }