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Merge pull request #111 from drpatelh/master

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Update awsbatch.config
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Harshil Patel 2019-12-12 14:32:59 +00:00 committed by GitHub
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2 changed files with 17 additions and 15 deletions
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14
conf/awsbatch.config
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//Nextflow config file for running on AWS batch //Nextflow config file for running on AWS batch
params { params {
config_profile_description = 'AWSBATCH Cloud Profile'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://aws.amazon.com/batch/'
awsqueue = false awsqueue = false
awsregion = 'eu-west-1' awsregion = 'eu-west-1'
config_profile_contact = 'Alexander Peltzer (@apeltzer)' awscli = '/home/ec2-user/miniconda/bin/aws'
config_profile_description = 'AWSBATCH Cloud Profile'
config_profile_name = 'AWSBATCH'
config_profile_url = 'https://aws.amazon.com/batch/'
tracedir = './' tracedir = './'
} }
process.executor = 'awsbatch' process.executor = 'awsbatch'
executor.awscli = '/home/ec2-user/miniconda/bin/aws' process.queue = params.awsqueue
aws.region = params.awsregion
executor.awscli = params.awscli

2
docs/awsbatch.md
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# nf-core/configs: awsbatch Configuration # nf-core/configs: awsbatch Configuration
To be used with `awsbatch`. To be used with `awsbatch`.
Custom queue and region can be entered with `params.awsqueue` and `params.region` respectively. Custom queue, region and CLI path can be supplied with `params.awsqueue`, `params.awsregion`, `params.awscli`, respectively.