From ab8998e12bd3739d060e52cedd50ab92e9b7bf16 Mon Sep 17 00:00:00 2001 From: Maxime Garcia Date: Thu, 27 Feb 2020 16:52:51 +0100 Subject: [PATCH] Update uppmax.config --- conf/pipeline/sarek/uppmax.config | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/conf/pipeline/sarek/uppmax.config b/conf/pipeline/sarek/uppmax.config index 2096684..84b65f8 100644 --- a/conf/pipeline/sarek/uppmax.config +++ b/conf/pipeline/sarek/uppmax.config @@ -3,10 +3,12 @@ params { config_profile_contact = 'Maxime Garcia (@MaxUlysse)' config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs' -} -params { - // Just useful until iGenomes is updated on UPPMAX +// Just useful until iGenomes is updated on UPPMAX igenomeIgnore = true genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle' } + +if (hostname ==~ "i.*") { + params.singleCPUmem = 15.GB +}