millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 16:29:55 +00:00
Code Issues Releases Packages Activity

adds varskip

Browse source
This commit is contained in:
Brad Langhorst 2021-08-03 13:33:31 -04:00
parent 0c3428f5d1
commit ac4372b610
1 changed files with 14 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

14
conf/pipeline/viralrecon/genomes.config
View file

@ -50,6 +50,20 @@ params {
scheme = 'nCoV-2019' scheme = 'nCoV-2019'
} }
} }
'NEB' {
'vss1' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vss1/neb_vss1.primer.bed'
scheme = 'nCoV-2019'
}
'vsl1' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vsl1/neb_vsl1.primer.bed'
scheme = 'nCoV-2019'
}
}
} }
} }
} }