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Code Issues Releases Packages Activity

Added config for limiting queue size and job submit rate

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This commit is contained in:
lquayle88 2022-09-19 16:30:30 +01:00
parent 55971bb94d
commit adc88cfa1f
1 changed files with 19 additions and 5 deletions
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22
conf/sbc_sharc.config
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@ -11,15 +11,20 @@
*/ */
params { // nf-core specific parameters displayed in header summary of each run
// nf-core specific parameters displayed in header summary of each run params {
config_profile_description = 'Sheffield Bioinformatics Core - ShARC' config_profile_description = 'Sheffield Bioinformatics Core - ShARC'
config_profile_contact = 'Lewis Quayle (l.quayle@sheffield.ac.uk)' config_profile_contact = 'Lewis Quayle (l.quayle@sheffield.ac.uk)'
config_profile_url = 'https://docs.hpc.shef.ac.uk/en/latest/sharc/index.html' config_profile_url = 'https://docs.hpc.shef.ac.uk/en/latest/sharc/index.html'
// hpc resource limits }
// hpc resource limits
params {
max_cpus = 16 max_cpus = 16
max_memory = 64.GB max_memory = 64.GB
@ -42,6 +47,16 @@ process {
} }
// optional executor settings
executor {
queueSize = 10
submitRateLimit = '1 sec'
}
// container engine // container engine
singularity { singularity {
@ -50,4 +65,3 @@ singularity {
autoMounts = true autoMounts = true
} }