From ac4372b610a33a0b3e7daeccd417c2342482d1c5 Mon Sep 17 00:00:00 2001 From: Brad Langhorst Date: Tue, 3 Aug 2021 13:33:31 -0400 Subject: [PATCH] adds varskip --- conf/pipeline/viralrecon/genomes.config | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index 3e3e299..25bce38 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -50,6 +50,20 @@ params { scheme = 'nCoV-2019' } } + 'NEB' { + 'vss1' { + fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta' + gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vss1/neb_vss1.primer.bed' + scheme = 'nCoV-2019' + } + 'vsl1' { + fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta' + gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/NEB/nCoV-2019/vsl1/neb_vsl1.primer.bed' + scheme = 'nCoV-2019' + } + } } } }