diff --git a/conf/pipeline/sarek/eddie.config b/conf/pipeline/sarek/eddie.config index 3e1b811..33c4e02 100644 --- a/conf/pipeline/sarek/eddie.config +++ b/conf/pipeline/sarek/eddie.config @@ -24,4 +24,10 @@ process { withName:GatherBQSRReports { clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} } + withName:HaplotypeCaller { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } + withName:GenotypeGVCFs { + clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"} + } }