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Update docs/pipeline/sarek/munin.md

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Update conf/pipeline/sarek/munin.config
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Maxime Garcia 2019-11-20 15:54:29 +01:00 committed by MaxUlysse
parent 73047968cf
commit b029ccaa59
2 changed files with 2 additions and 3 deletions
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1
conf/pipeline/sarek/munin.config
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@ -21,5 +21,4 @@ params {
// Specific nf-core/sarek configuration // Specific nf-core/sarek configuration
withLabel:sentieon { withLabel:sentieon {
module = {params.sentieon ? 'sentieon/201808.05' : ''} module = {params.sentieon ? 'sentieon/201808.05' : ''}
container = {params.sentieon ? '' : 'nfcore/sarek:dev'}
} }

4
docs/pipeline/sarek/munin.md
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@ -6,7 +6,7 @@ Extra specific configuration for sarek pipeline
To use, run the pipeline with `-profile munin`. To use, run the pipeline with `-profile munin`.
This will download and launch the [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. This will download and launch the sarek specific [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
Example: `nextflow run nf-core/sarek -profile munin` Example: `nextflow run nf-core/sarek -profile munin`
@ -19,4 +19,4 @@ Specific configurations for MUNIN has been made for sarek.
* Path to `vep_cache`: `/data1/cache/VEP/` * Path to `vep_cache`: `/data1/cache/VEP/`
* Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz` * Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz`
* Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi` * Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi`
* Load module `Sentieon` for Processes with `sentieon` labels * Load module `Sentieon` for Processes with `sentieon` labels