Adds in GitHub Actions tests

.github/linting.yml

@@ -0,0 +1,20 @@
+name: Markdown linting
+# This workflow is triggered on pushes and PRs to the repository.
+on: [push, pull_request]  
+
+jobs:
+  Markdown:
+    runs-on: ubuntu-18.04
+    steps:
+      - uses: actions/checkout@v1
+      - uses: actions/setup-node@v1
+        with:
+          node-version: '10'
+      - name: Install markdownlint
+        run: |
+          npm install -g markdownlint-cli
+      - name: Run Markdownlint
+        run: |
+          markdownlint ${GITHUB_WORKSPACE} -c ${GITHUB_WORKSPACE}/.github/markdownlint.yml
+
+ 

.github/main.yml

@@ -0,0 +1,22 @@
+name: nfcore configs tests
+
+## Check whether users added their config to the matrix
+on: [push, pull_request]
+  paths:
+    - '.github/main.workflow'
+
+jobs:
+  job_1:
+    name: Run individual profiles
+    strategy:
+        matrix:
+            profile: ['awsbatch, bigpurple, binac, cbe, ccga_dx, ccga, cfc, crick, czbiohub_aws_highpriority, czbiohub_aws, denbi_qbic, genouest, gis, hebbe, kraken, munin, pasteur, phoenix, prince, shh, uct_hex, uppmax_devel, uppmax, uzh']
+    steps:
+        - uses: actions/checkout@v1
+        - name: Install Nextflow
+        run: |
+          wget -qO- get.nextflow.io | bash
+          sudo mv nextflow /usr/local/bin/
+        - name: Check ${{ matrix.profile }} profile
+          run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}
+

.travis.yml

@@ -1,30 +0,0 @@
-sudo: required
-language: python
-jdk: openjdk8
-services:
-  - docker
-python:
-  - '3.6'
-cache: pip
-matrix:
-  fast_finish: true
-
-install:
-  # Install Nextflow
-  - mkdir /tmp/nextflow && cd /tmp/nextflow
-  - wget -qO- get.nextflow.io | bash
-  - sudo ln -s /tmp/nextflow/nextflow /usr/local/bin/nextflow
-  - mkdir -p ${TRAVIS_BUILD_DIR}/tests && cd ${TRAVIS_BUILD_DIR}/tests
-
-env:
-  - NXF_VER='18.10.1' SCRATCH='~' # Specify a minimum NF version that should be tested and work. Set SCRATCH for prince.config.
-  - NXF_VER='' SCRATCH='~'        # Plus: get the latest NF version and check, that it works. Set SCRATCH for prince.config.
-
-script:
-  # Run the pipeline with the test profile and test remote config
-  - |
-      grep "{.*includeConfig.*[a-z]*\.config\"" ${TRAVIS_BUILD_DIR}/nfcore_custom.config | \
-      tr -s ' ' | \
-      cut -d " " -f 2 | \
-      grep -v "czbiohub_aws" | \
-      xargs -I {} nextflow run ${TRAVIS_BUILD_DIR}/configtest.nf --custom_config_base=${TRAVIS_BUILD_DIR} -profile {}

README.md

@@ -1,18 +1,22 @@
 # ![nf-core/configs](docs/images/nfcore-configs_logo.png)
 
-[![Build Status](https://travis-ci.org/nf-core/configs.svg?branch=master)](https://travis-ci.org/nf-core/configs)
+[![Lint Status](https://github.com/nf-core/config/workflows/nfcore%20configs%20tests/badge.svg)](https://github.com/nf-core/config/workflows/nfcore%20configs%20tests/badge.svg)
 
 A repository for hosting nextflow config files containing custom parameters required to run nf-core pipelines at different Institutions.
 
 ## Table of contents
-* [Using an existing config](#using-an-existing-config)
+
+* [!nf-core/configs](#nf-coreconfigs)
+  * [Table of contents](#table-of-contents)
+  * [Using an existing config](#using-an-existing-config)
     * [Configuration and parameters](#configuration-and-parameters)
     * [Offline usage](#offline-usage)
-* [Adding a new config](#adding-a-new-config)
+  * [Adding a new config](#adding-a-new-config)
+  * [Checking user hostnames](#checking-user-hostnames)
     * [Testing](#testing)
     * [Documentation](#documentation)
     * [Uploading to `nf-core/configs`](#uploading-to-nf-coreconfigs)
-* [Help](#help)
+  * [Help](#help)
 
 ## Using an existing config
 
@@ -111,6 +115,8 @@ Currently documentation is available for the following systems:
 
 [Fork](https://help.github.com/articles/fork-a-repo/) the `nf-core/configs` repository to your own GitHub account. Within the local clone of your fork add the custom config file to the [`conf/`](https://github.com/nf-core/configs/tree/master/conf) directory, and the documentation file to the [`docs/`](https://github.com/nf-core/configs/tree/master/docs) directory. You will also need to edit and add your custom profile to the [`nfcore_custom.config`](https://github.com/nf-core/configs/blob/master/nfcore_custom.config) file in the top-level directory of the clone.
 
+Afterwards, make sure to edit the `.github/main.yml` file and add your profile name to alphabetically sorted `profile:` scope. This way, it will be tested automatically using GitHub Actions.
+
 Commit and push these changes to your local clone on GitHub, and then [create a pull request](https://help.github.com/articles/creating-a-pull-request-from-a-fork/) on the `nf-core/configs` GitHub repo with the appropriate information.
 
 We will be notified automatically when you have created your pull request, and providing that everything adheres to nf-core guidelines we will endeavour to approve your pull request as soon as possible.