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Adding config file for CCGA dx cluster
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3 changed files with 39 additions and 0 deletions
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@ -85,6 +85,7 @@ Currently documentation is available for the following clusters:
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* [BINAC](docs/binac.md)
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* [BIGPURPLE](docs/bigpurple.md)
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* [CCGA](docs/ccga.md)
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* [CCGA-DX]/docs/ccga_dx.md)
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* [CFC](docs/binac.md)
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* [CRICK](docs/crick.md)
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* [GIS](docs/gis.md)
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37
conf/ccga_dx.config
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37
conf/ccga_dx.config
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@ -0,0 +1,37 @@
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'CCGA DX cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Marc Hoeppner (@marchoeppner)'
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config_profile_url = 'https://www.ccga.uni-kiel.de/'
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}
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/*
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* -------------------------------------------------
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* Nextflow config file for CCGA cluster in Kiel
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* -------------------------------------------------
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*/
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singularity {
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enabled = true
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}
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executor {
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queueSize=100
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}
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process {
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// Global process config
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executor = 'slurm'
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queue = 'htc'
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}
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params {
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// illumina iGenomes reference file paths on DX Cluster
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igenomes_base = '/mnt/ld_ng_out/sukmb352/references/iGenomes/references/'
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saveReference = true
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max_memory = 250.GB
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max_cpus = 20
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max_time = 240.h
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}
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@ -14,6 +14,7 @@ params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/$
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profiles {
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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ccga { includeConfig "${params.custom_config_base}/conf/ccga.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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cfc { includeConfig "${params.custom_config_base}/conf/cfc.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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