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Merge pull request #388 from nvnieuwk/singularity-fix-for-vsc_ugent

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Singularity fix for vsc ugent
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Maxime U. Garcia 2022-06-08 16:34:38 +02:00 committed by GitHub
commit b50af6bf7e
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1 changed files with 4 additions and 5 deletions
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conf/vsc_ugent.config
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@ -19,6 +19,10 @@ singularity {
cacheDir = "$scratch_dir/singularity" cacheDir = "$scratch_dir/singularity"
} }
env {
SINGULARITY_CACHEDIR="$scratch_dir/.singularity"
}
// Define profiles for each cluster // Define profiles for each cluster
profiles { profiles {
skitty { skitty {
@ -35,7 +39,6 @@ profiles {
executor = 'slurm' executor = 'slurm'
queue = 'skitty' queue = 'skitty'
maxRetries = 2 maxRetries = 2
beforeScript = "export SINGULARITY_CACHEDIR=$scratch_dir/.singularity"
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }
@ -54,7 +57,6 @@ profiles {
executor = 'slurm' executor = 'slurm'
queue = 'swalot' queue = 'swalot'
maxRetries = 2 maxRetries = 2
beforeScript = "export SINGULARITY_CACHEDIR=$scratch_dir/.singularity"
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }
@ -73,7 +75,6 @@ profiles {
executor = 'slurm' executor = 'slurm'
queue = 'victini' queue = 'victini'
maxRetries = 2 maxRetries = 2
beforeScript = "export SINGULARITY_CACHEDIR=$scratch_dir/.singularity"
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }
@ -92,7 +93,6 @@ profiles {
executor = 'slurm' executor = 'slurm'
queue = 'kirlia' queue = 'kirlia'
maxRetries = 2 maxRetries = 2
beforeScript = "export SINGULARITY_CACHEDIR=$scratch_dir/.singularity"
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }
@ -111,7 +111,6 @@ profiles {
executor = 'slurm' executor = 'slurm'
queue = 'doduo' queue = 'doduo'
maxRetries = 2 maxRetries = 2
beforeScript = "export SINGULARITY_CACHEDIR=$scratch_dir/.singularity"
scratch = "$scratch_dir" scratch = "$scratch_dir"
} }
} }