diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index 8839f62..c21ccde 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -8,8 +8,8 @@ jobs: steps: - uses: actions/checkout@v1 - name: Check whether profiles are all tested - run: | - python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml + run: python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml + - run: nextflow config -show-profiles . profile_test: runs-on: ubuntu-latest name: Run ${{ matrix.profile }} profile @@ -24,7 +24,4 @@ jobs: wget -qO- get.nextflow.io | bash sudo mv nextflow /usr/local/bin/ - name: Check ${{ matrix.profile }} profile - env: - SCRATCH: '~' - NXF_GLOBAL_CONFIG: awsbatch.config run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf -profile ${{ matrix.profile }}