Added SAHMRI HPC profile

.github/workflows/main.yml

@@ -63,6 +63,7 @@ jobs:
             - 'phoenix'
             - 'prince'
             - 'rosalind'
+            - 'sahmri'
             - 'sanger'
             - 'seg_globe'
             - 'uct_hpc'

conf/sahmri.config

@@ -0,0 +1,28 @@
+params {
+  config_profile_description = 'South Australian Medial Health and Research Institute (SAHMRI) HPC cluster profile.'
+  config_profile_contact = 'Nathan Watson-Haigh (nathan.watson-haigh@sahmri.com)'
+  config_profile_url = "https://sahmri.com"
+  max_memory      = 375.GB
+  max_cpus        = 32
+  max_time        = 14.d
+  igenomes_base   = '/cancer/storage/shared/igenomes/'
+}
+process {
+  executor        = 'slurm'
+  queue           = 'sahmri_prod_hpc,sahmri_cancer_hpc'
+  maxRetries      = 2
+
+  cpus            = { check_max( 2 * task.attempt, 'cpus') }
+  memory          = { check_max( 1.GB * task.attempt, 'memory') }
+  time            = { check_max( 10.m * task.attempt, 'time') }
+}
+executor {
+  queueSize       = 50
+  submitRateLimit = '10 sec'
+}
+singularity {
+  enabled         = true
+  autoMounts      = true
+  cacheDir        = '/cancer/storage/shared/simg'
+}
+cleanup = true