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Update docs/ccga_dx.md

Co-Authored-By: Harshil Patel <drpatelh@users.noreply.github.com>
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marchoeppner 2019-07-29 12:45:30 +02:00 committed by GitHub
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Deployment and testing of nf-core pipelines at the CCGA DX cluster is on-going. Deployment and testing of nf-core pipelines at the CCGA DX cluster is on-going.
To use, run the pipeline with `-profile ccga_dx`. This will download and launch the [`ccga.config`](../conf/ccga.config) which has been pre-configured with a setup suitable for the CCGA cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline. To use, run the pipeline with `-profile ccga_dx`. This will download and launch the [`ccga_dx.config`](../conf/ccga_dx.config) which has been pre-configured with a setup suitable for the CCGA cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
Before running the pipeline you will need to have Nextflow installed. Before running the pipeline you will need to have Nextflow installed.