millironx/nf-configs
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pierrespc 2021-09-16 12:53:17 +02:00
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2
.github/workflows/main.yml vendored
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@ -52,6 +52,8 @@ jobs:
- 'nu_genomics' - 'nu_genomics'
- 'oist' - 'oist'
- 'pasteur' - 'pasteur'
- 'pasteurNorm'
- 'pasteurLong'
- 'phoenix' - 'phoenix'
- 'prince' - 'prince'
- 'sanger' - 'sanger'

2
README.md
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@ -121,6 +121,8 @@ Currently documentation is available for the following systems:
* [NU_GENOMICS](docs/nu_genomics.md) * [NU_GENOMICS](docs/nu_genomics.md)
* [OIST](docs/oist.md) * [OIST](docs/oist.md)
* [PASTEUR](docs/pasteur.md) * [PASTEUR](docs/pasteur.md)
* [PASTEURNORM](docs/pasteurMaestroNormal.md)
* [PASTEURLONG](docs/pasteurMaestroLong.md)
* [PHOENIX](docs/phoenix.md) * [PHOENIX](docs/phoenix.md)
* [PRINCE](docs/prince.md) * [PRINCE](docs/prince.md)
* [SANGER](docs/sanger.md) * [SANGER](docs/sanger.md)

8
docs/pasteurMaestroLong.md Normal file
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@ -0,0 +1,8 @@
# nf-core/configs: Institut Pasteur Configuration on Maestro
This is an intent for configuration of nf-core in Maestro cluster on the long qos
I am not expert of nf-core so pelase refer to docs/pasteur.md for installing and running nf-core
Run the pipeline with `-profile pasteurLong`

8
docs/pasteurMaestroNormal.md Normal file
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@ -0,0 +1,8 @@
# nf-core/configs: Institut Pasteur Configuration on Maestro
This is an intent for configuration of nf-core in Maestro cluster on the normal qos
I am not expert of nf-core so pelase refer to docs/pasteur.md for installing and running nf-core
Run the pipeline with `-profile pasteurNorm`

2
nfcore_custom.config
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@ -46,6 +46,8 @@ profiles {
nu_genomics { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" } nu_genomics { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" }
oist { includeConfig "${params.custom_config_base}/conf/oist.config" } oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" } pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
pasteurNorm { includeConfig "${params.custom_config_base}/conf/pasteurMaestroNormal.config" }
pasteurLong { includeConfig "${params.custom_config_base}/conf/pasteurMaestroLong.config" }
phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" } phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
prince { includeConfig "${params.custom_config_base}/conf/prince.config" } prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"} sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}