millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 08:29:54 +00:00
Code Issues Releases Packages Activity

requires files edited

Browse source
This commit is contained in:
pierrespc 2021-09-16 12:53:17 +02:00
parent 482e7cf8de
commit b9682bbc91
5 changed files with 22 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
.github/workflows/main.yml vendored
View file

@ -52,6 +52,8 @@ jobs:
- 'nu_genomics'
- 'oist'
- 'pasteur'
- 'pasteurNorm'
- 'pasteurLong'
- 'phoenix'
- 'prince'
- 'sanger'

2
README.md
View file

@ -121,6 +121,8 @@ Currently documentation is available for the following systems:
* [NU_GENOMICS](docs/nu_genomics.md)
* [OIST](docs/oist.md)
* [PASTEUR](docs/pasteur.md)
* [PASTEURNORM](docs/pasteurMaestroNormal.md)
* [PASTEURLONG](docs/pasteurMaestroLong.md)
* [PHOENIX](docs/phoenix.md)
* [PRINCE](docs/prince.md)
* [SANGER](docs/sanger.md)

8
docs/pasteurMaestroLong.md Normal file
View file

@ -0,0 +1,8 @@
# nf-core/configs: Institut Pasteur Configuration on Maestro
This is an intent for configuration of nf-core in Maestro cluster on the long qos
I am not expert of nf-core so pelase refer to docs/pasteur.md for installing and running nf-core
Run the pipeline with `-profile pasteurLong`

8
docs/pasteurMaestroNormal.md Normal file
View file

@ -0,0 +1,8 @@
# nf-core/configs: Institut Pasteur Configuration on Maestro
This is an intent for configuration of nf-core in Maestro cluster on the normal qos
I am not expert of nf-core so pelase refer to docs/pasteur.md for installing and running nf-core
Run the pipeline with `-profile pasteurNorm`

2
nfcore_custom.config
View file

@ -46,6 +46,8 @@ profiles {
nu_genomics { includeConfig "${params.custom_config_base}/conf/nu_genomics.config" }
oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
pasteurNorm { includeConfig "${params.custom_config_base}/conf/pasteurMaestroNormal.config" }
pasteurLong { includeConfig "${params.custom_config_base}/conf/pasteurMaestroLong.config" }
phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
sanger { includeConfig "${params.custom_config_base}/conf/sanger.config"}