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Update mpcdf.config

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James A. Fellows Yates 2021-04-15 22:27:07 +02:00 committed by GitHub
parent 0fc90586e0
commit b9a00f7926
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1 changed files with 20 additions and 9 deletions
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29
conf/mpcdf.config
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@ -1,18 +1,15 @@
params { params {
config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.' config_profile_description = 'MPCDF HPC profiles (unoffically) provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)' config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://www.mpcdf.mpg.de/services/computing' config_profile_url = 'https://www.mpcdf.mpg.de/services/supercomputing'
} }
profiles { profiles {
cobra { cobra {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// To create common cache dir
process { process {
beforeScript = 'module load anaconda/3/2020.02' beforeScript = 'module load singularity'
executor = 'slurm' executor = 'slurm'
} }
@ -20,6 +17,13 @@ profiles {
queueSize = 8 queueSize = 8
} }
// Set $NXF_SINGULARITY_CACHEDIR in your ~/.bash_profile
// to stop downloading the same image for every run
singularity {
enabled = true
autoMounts = true
}
params { params {
config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.' config_profile_description = 'MPCDF cobra profile (unofficially) provided by nf-core/configs.'
max_memory = 725.GB max_memory = 725.GB
@ -28,12 +32,9 @@ profiles {
} }
} }
raven { raven {
// Does not have singularity! Conda module must be used, but it is
// recommended to set NXF_CONDA_CACHEDIR var in ~/.bash{_profile,rc}
// to create common cache dir
process { process {
beforeScript = 'module load anaconda/3/2020.02' beforeScript = 'module load singularity'
executor = 'slurm' executor = 'slurm'
} }
@ -41,6 +42,13 @@ profiles {
queueSize = 8 queueSize = 8
} }
// Set $NXF_SINGULARITY_CACHEDIR in your ~/.bash_profile
// to stop downloading the same image for every run
singularity {
enabled = true
autoMounts = true
}
params { params {
config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.' config_profile_description = 'MPCDF raven profile (unofficially) provided by nf-core/configs.'
max_memory = 368.GB max_memory = 368.GB
@ -48,4 +56,7 @@ profiles {
max_time = 24.h max_time = 24.h
} }
} }
debug {
cleanup = false
}
} }