From 4828e78708ecf6ddb8a2a8db560bb72f72357330 Mon Sep 17 00:00:00 2001
From: Piotr Faba <piotr.faba@ardigen.com>
Date: Thu, 2 Jul 2020 21:57:44 +0200
Subject: [PATCH 1/3] fix error introduced earlier

---
 conf/bi.config | 21 ++++++++-------------
 1 file changed, 8 insertions(+), 13 deletions(-)

diff --git a/conf/bi.config b/conf/bi.config
index 65059e3..3a77bb7 100644
--- a/conf/bi.config
+++ b/conf/bi.config
@@ -4,17 +4,12 @@ params{
   config_profile_url = 'https://www.boehringer-ingelheim.com/'
 }
 
-params.globalConfig = set_global_config()
-
-
-def set_global_config() {
-  def config = System.getenv('NXF_GLOBAL_CONFIG')
-  if(config  == null)
-  {
-      def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
-      System.err.println(errorMessage)
-  }else{
-    includeConfig config
-  }
-  return config
+def configVar = System.getenv('NXF_GLOBAL_CONFIG')
+if(configVar  == null)
+{
+    def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
+    System.err.println(errorMessage)
+}else{
+  params.globalConfig = configVar
+  includeConfig configVar
 }

From 4181184f58892a6c42efba3e9bd1eceaf7a6fd73 Mon Sep 17 00:00:00 2001
From: Piotr Faba <piotr.faba@ardigen.com>
Date: Thu, 2 Jul 2020 22:00:37 +0200
Subject: [PATCH 2/3] fix spaces

---
 conf/bi.config | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/conf/bi.config b/conf/bi.config
index 3a77bb7..fe2ae17 100644
--- a/conf/bi.config
+++ b/conf/bi.config
@@ -10,6 +10,6 @@ if(configVar  == null)
     def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
     System.err.println(errorMessage)
 }else{
-  params.globalConfig = configVar
-  includeConfig configVar
+    params.globalConfig = configVar
+    includeConfig configVar
 }

From cb7a6f756af97154cc2867c484488408caa0babd Mon Sep 17 00:00:00 2001
From: Piotr Faba <piotr.faba@ardigen.com>
Date: Tue, 7 Jul 2020 13:48:28 +0200
Subject: [PATCH 3/3] reduce complexity

---
 conf/bi.config | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/conf/bi.config b/conf/bi.config
index fe2ae17..1a218f1 100644
--- a/conf/bi.config
+++ b/conf/bi.config
@@ -4,12 +4,11 @@ params{
   config_profile_url = 'https://www.boehringer-ingelheim.com/'
 }
 
-def configVar = System.getenv('NXF_GLOBAL_CONFIG')
-if(configVar  == null)
+params.globalConfig = System.getenv('NXF_GLOBAL_CONFIG')
+if(params.globalConfig == null)
 {
     def errorMessage = "WARNING: For bi.config requires NXF_GLOBAL_CONFIG env var to be set. Point it to global.config file if you want to use this profile."
     System.err.println(errorMessage)
 }else{
-    params.globalConfig = configVar
-    includeConfig configVar
+    includeConfig params.globalConfig
 }