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changed # to // for comments
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@ -16,16 +16,16 @@ singularity {
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process {
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executor = 'sge'
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# memory environment & options
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// memory environment & options
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clusterOptions = {"-l h_vmem=${task.memory.bytes/task.cpus}"}
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penv = 'sharedmem'
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# common SGE error statuses
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// common SGE error statuses
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errorStrategy = {task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish'}
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maxErrors = '-1'
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maxRetries = 3
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# load module script for Anaconda and Singularity
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// load module script for Anaconda and Singularity
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beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
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module = 'anaconda/5.3.1'
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module = 'singularity/3.5.3'
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