diff --git a/conf/medair.config b/conf/medair.config new file mode 100644 index 0000000..6cce6f9 --- /dev/null +++ b/conf/medair.config @@ -0,0 +1,39 @@ +//Profile config names for nf-core/configs +params { + config_profile_description = 'Cluster profile for medair (local cluster of Clinical Genomics Gothenburg)' + config_profile_contact = 'Clinical Genomics, Gothenburg' + config_profile_url = 'https://www.scilifelab.se/units/clinical-genomics-goteborg/' +} + +//Nextflow parameters +singularity { + enabled = true +} + +profiles { + + wgs { + process { + queue = 'wgs.q' + executor = 'sge' + penv = 'mpi' + process.clusterOptions = '-l excl=1' + params.max_cpus = 40 + params.max_time = 48.h + params.max_memory = 128.GB + } + } + + production { + process { + queue = 'production.q' + executor = 'sge' + penv = 'mpi' + process.clusterOptions = '-l excl=1' + params.max_cpus = 40 + params.max_time = 480.h + params.max_memory = 128.GB + } + } +} +