From bb35d8e5d18f7d99b16f6f209b0e0ba589b6842a Mon Sep 17 00:00:00 2001
From: Gwenna Breton <gwenna.breton@gu.se>
Date: Thu, 30 Jun 2022 11:42:36 +0200
Subject: [PATCH] Added conf file for medair

---
 conf/medair.config | 39 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 39 insertions(+)
 create mode 100644 conf/medair.config

diff --git a/conf/medair.config b/conf/medair.config
new file mode 100644
index 0000000..6cce6f9
--- /dev/null
+++ b/conf/medair.config
@@ -0,0 +1,39 @@
+//Profile config names for nf-core/configs
+params {
+  config_profile_description = 'Cluster profile for medair (local cluster of Clinical Genomics Gothenburg)'
+  config_profile_contact = 'Clinical Genomics, Gothenburg'
+  config_profile_url = 'https://www.scilifelab.se/units/clinical-genomics-goteborg/'
+}
+
+//Nextflow parameters
+singularity {
+    enabled = true
+}
+
+profiles {
+  
+  wgs {
+    process {
+      queue = 'wgs.q'
+      executor = 'sge'
+      penv = 'mpi'
+      process.clusterOptions = '-l excl=1'
+      params.max_cpus = 40
+      params.max_time = 48.h
+      params.max_memory = 128.GB
+    }
+  }
+
+  production {
+    process {
+      queue = 'production.q'
+      executor = 'sge'
+      penv = 'mpi'
+      process.clusterOptions = '-l excl=1'
+      params.max_cpus = 40
+      params.max_time = 480.h
+      params.max_memory = 128.GB
+    }
+  }
+}
+