diff --git a/conf/eddie.config b/conf/eddie.config index 5b156be..3968783 100644 --- a/conf/eddie.config +++ b/conf/eddie.config @@ -16,16 +16,16 @@ singularity { process { executor = 'sge' - # memory environment & options + // memory environment & options clusterOptions = {"-l h_vmem=${task.memory.bytes/task.cpus}"} penv = 'sharedmem' - # common SGE error statuses + // common SGE error statuses errorStrategy = {task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish'} maxErrors = '-1' maxRetries = 3 - # load module script for Anaconda and Singularity + // load module script for Anaconda and Singularity beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' } module = 'anaconda/5.3.1' module = 'singularity/3.5.3'