diff --git a/docs/pasteur.md b/docs/pasteur.md index 676199d..554761b 100644 --- a/docs/pasteur.md +++ b/docs/pasteur.md @@ -8,14 +8,16 @@ To use, run the pipeline with `-profile pasteur`. This will download and launch ## Running the workflow on the Pasteur cluster ->Nextflow is not installed by default on the Pasteur cluster. +Nextflow is not installed by default on the Pasteur cluster. - Install Nextflow : [here](https://www.nextflow.io/docs/latest/getstarted.html#) ->Nextflow manages each process as a separate job that is submitted to the cluster by using the sbatch command. +Nextflow manages each process as a separate job that is submitted to the cluster by using the sbatch command. Nextflow shouldn't run directly on the submission node but on a compute node. -The compute nodes don't have access to internet so you need to run it offline. To do that: -1. Create a virtualenv to install nf-core in order to get the workflow +The compute nodes don't have access to internet so you need to run it offline. + +To do that: +1. Create a virtualenv to install nf-core ```bash module purge module load Python/3.6.0