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Ran prettier on docs/sbc_sharc.md

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lquayle88 2022-09-14 10:24:56 +01:00
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docs/sbc_sharc.md
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@ -1,6 +1,5 @@
# nf-core/configs: Sheffield Bioinformatics Core Facility ShARC Configuration # nf-core/configs: Sheffield Bioinformatics Core Facility ShARC Configuration
## Using the SBC_ShARC Institutional Configuration Profile ## Using the SBC_ShARC Institutional Configuration Profile
To use [`sbc_sharc.config`](../conf/sbc_sharc.config), run nextflow with an nf-core pipeline using `-profile sbc_sharc` (note the single hyphen). To use [`sbc_sharc.config`](../conf/sbc_sharc.config), run nextflow with an nf-core pipeline using `-profile sbc_sharc` (note the single hyphen).
@ -23,7 +22,6 @@ When using [`sbc_sharc.config`](../conf/sbc_sharc.config) with the pipelines lis
The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future. The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future.
## A Note on Singularity Containers ## A Note on Singularity Containers
The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file supports running nf-core pipelines with Singularity containers; Singularity images will be downloaded automatically before execution of the pipeline. The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file supports running nf-core pipelines with Singularity containers; Singularity images will be downloaded automatically before execution of the pipeline.
@ -40,4 +38,3 @@ mkdir /data/$USER/.singularity
# link the new directory with the existing one # link the new directory with the existing one
ln -s /data/$USER/.singularity .singularity ln -s /data/$USER/.singularity .singularity
``` ```