millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Ran prettier on docs/sbc_sharc.md

Browse source
This commit is contained in:
lquayle88 2022-09-14 10:24:56 +01:00
parent 32403b6222
commit be356eb400
1 changed files with 0 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
docs/sbc_sharc.md
View file

@ -1,6 +1,5 @@
# nf-core/configs: Sheffield Bioinformatics Core Facility ShARC Configuration
## Using the SBC_ShARC Institutional Configuration Profile
To use [`sbc_sharc.config`](../conf/sbc_sharc.config), run nextflow with an nf-core pipeline using `-profile sbc_sharc` (note the single hyphen).
@ -23,7 +22,6 @@ When using [`sbc_sharc.config`](../conf/sbc_sharc.config) with the pipelines lis
The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file might work with other nf-core pipelines as it stands but we cannot guarantee they will run without issue. We will be continuing to create, test and optimise configurations for new pipelines in the future.
## A Note on Singularity Containers
The [`sbc_sharc.config`](../conf/sbc_sharc.config) configuration file supports running nf-core pipelines with Singularity containers; Singularity images will be downloaded automatically before execution of the pipeline.
@ -40,4 +38,3 @@ mkdir /data/$USER/.singularity
# link the new directory with the existing one
ln -s /data/$USER/.singularity .singularity
```