From be5ed212690b823e9ebef368531b7b2926b6e1ce Mon Sep 17 00:00:00 2001 From: drpatelh Date: Wed, 18 Dec 2019 10:54:31 +0000 Subject: [PATCH] Update docs --- docs/crick.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/docs/crick.md b/docs/crick.md index 7d76e30..ee2f103 100644 --- a/docs/crick.md +++ b/docs/crick.md @@ -9,11 +9,11 @@ Before running the pipeline you will need to load Nextflow and Singularity using ```bash ## Load Nextflow and Singularity environment modules module purge -module load Nextflow/0.32.0 +module load Nextflow/19.10.0 module load Singularity/2.6.0-foss-2016b ``` -A local copy of the iGenomes resource has been made available on CAMP so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. You can do this by simply using the `--genome ` parameter. Some of the more exotic genomes may not have been downloaded onto CAMP so have a look in the `igenomes_base` path specified in [`crick.config`](../conf/crick.config), and if your genome of interest isnt present please contact [BABS](mailto:bioinformatics@crick.ac.uk). +A local copy of the [AWS-iGenomes](https://github.com/ewels/AWS-iGenomes) resource has been made available on CAMP so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. You can do this by simply using the `--genome ` parameter. Some of the more exotic genomes may not have been downloaded onto CAMP so have a look in the `igenomes_base` path specified in [`crick.config`](../conf/crick.config), and if your genome of interest isnt present please contact [BABS](mailto:bioinformatics@crick.ac.uk). Alternatively, if you are running the pipeline regularly for genomes that arent available in the iGenomes resource, we recommend creating a config file with paths to your reference genome indices (see [`reference genomes documentation`](https://github.com/nf-core/atacseq/blob/master/docs/configuration/reference_genomes.md) for instructions).