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Merge pull request #375 from nf-core/ifb_core-config-update
Ifb core config update
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commit
be9711731a
2 changed files with 11 additions and 8 deletions
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@ -2,23 +2,22 @@
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params {
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config_profile_description = 'The IFB core cluster profile'
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config_profile_contact = 'https://community.france-bioinformatique.fr'
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config_profile_url = 'https://www.france-bioinformatique.fr/'
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config_profile_url = 'https://ifb-elixirfr.gitlab.io/cluster/doc/cluster-desc/'
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}
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singularity {
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// need one image per execution
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enabled = true
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runOptions = '-B /shared'
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}
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process {
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executor = 'slurm'
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queue = { task.time <= 24.h ? 'fast' : 'long' }
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}
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params {
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igenomes_ignore = true
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// Max resources requested by a normal node on genotoul.
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max_memory = 240.GB
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max_cpus = 28
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max_time = 96.h
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max_memory = 252.GB
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max_cpus = 56
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max_time = 720.h
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}
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@ -6,7 +6,8 @@ To use, run the pipeline with `-profile ifb_core`. This will download and launch
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## How to use on IFB core
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Before running the pipeline you will need to load Nextflow using the environment module system on IFB core. You can do this by issuing the commands below:
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Here is [the link to the cluster's documentation](https://ifb-elixirfr.gitlab.io/cluster/doc/quick-start/).
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Before running the pipeline you will need to load Nextflow and other dependencies using the environment module system on IFB core. You can do this by issuing the commands below:
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```bash
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# Login to a compute node
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@ -14,7 +15,10 @@ srun --pty bash
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## Load Nextflow and Singularity environment modules
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module purge
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module load nextflow/20.04.1
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module load nextflow
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module load singularity
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module load openjdk
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# Run a downloaded/git-cloned nextflow workflow from
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nextflow run \\
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