From 0f56588accdb577e51b78a730330d6e133ab2ec1 Mon Sep 17 00:00:00 2001
From: ameynert <alison.meynert@igmm.ed.ac.uk>
Date: Thu, 6 Jan 2022 10:15:34 +0000
Subject: [PATCH] Added memory & cluster options specification for eddie sarek
 config

---
 conf/pipeline/sarek/eddie.config | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/conf/pipeline/sarek/eddie.config b/conf/pipeline/sarek/eddie.config
index 9629337..1928a9a 100644
--- a/conf/pipeline/sarek/eddie.config
+++ b/conf/pipeline/sarek/eddie.config
@@ -2,6 +2,8 @@ process {
 
   withName:MapReads {
     cpus = 16
+    memory = 128.GB
+    clusterOptions = {"-l h_vmem=${(task.memory + 8.GB).bytes/task.cpus}"}
   }
   withName:BuildDict {
     cpus = 1