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fix linting errors

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arontommi 2020-11-26 13:47:47 +01:00
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docs/uppmax.md
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@ -74,14 +74,12 @@ It is not suitable for use with real data.
To use it, submit with `-profile uppmax,devel`. To use it, submit with `-profile uppmax,devel`.
## Running on Bianca ## Running on Bianca
For security reasons, there is no internet access on Bianca so you can't download from or upload files to the cluster directly. Before running a nf-core pipeline on Bianca you will first have to download the pipeline and singularity images needed elsewhere and transfer them via the wharf area to your Bianca project. For security reasons, there is no internet access on Bianca so you can't download from or upload files to the cluster directly. Before running a nf-core pipeline on Bianca you will first have to download the pipeline and singularity images needed elsewhere and transfer them via the wharf area to your Bianca project.
You can follow the guide for downloading pipelines [for offline use](https://nf-co.re/tools#downloading-pipelines-for-offline-use). Note that you will have to download the singularity images as well. You can follow the guide for downloading pipelines [for offline use](https://nf-co.re/tools#downloading-pipelines-for-offline-use). Note that you will have to download the singularity images as well.
Next transfer the pipeline and the singularity images to your project. Before running the pipeline you will have to indicate to nextflow where the singularity images are located by setting `NXF_SINGULARITY_CACHEDIR` : Next transfer the pipeline and the singularity images to your project. Before running the pipeline you will have to indicate to nextflow where the singularity images are located by setting `NXF_SINGULARITY_CACHEDIR` :
`export NXF_SINGULARITY_CACHEDIR=Your_Location_For_The_Singularity_directory/.` `export NXF_SINGULARITY_CACHEDIR=Your_Location_For_The_Singularity_directory/.`