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Better code

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Alexander Peltzer 2019-11-26 14:11:16 +01:00
parent dea11df453
commit c3c7c74d79
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1 changed files with 10 additions and 4 deletions
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12
.github/workflows/main.yml vendored
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@ -2,9 +2,18 @@ name: Configs tests
on: [pull_request, push] on: [pull_request, push]
jobs: jobs:
test_all_profiles:
runs-on: ubuntu-latest
name: Check if all profiles are tested
steps:
- uses: actions/checkout@v1
- name: Check whether profiles are all tested
run: |
python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
profile_test: profile_test:
runs-on: ubuntu-latest runs-on: ubuntu-latest
name: Run individual profiles name: Run individual profiles
needs: test_all_profiles
strategy: strategy:
matrix: matrix:
profile: ['awsbatch', 'bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga', 'cfc', 'crick', 'czbiohub_aws_highpriority', 'czbiohub_aws', 'denbi_qbic', 'genouest', 'gis', 'hebbe', 'kraken', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hex', 'uppmax_devel', 'uppmax', 'uzh'] profile: ['awsbatch', 'bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga', 'cfc', 'crick', 'czbiohub_aws_highpriority', 'czbiohub_aws', 'denbi_qbic', 'genouest', 'gis', 'hebbe', 'kraken', 'munin', 'pasteur', 'phoenix', 'prince', 'shh', 'uct_hex', 'uppmax_devel', 'uppmax', 'uzh']
@ -14,8 +23,5 @@ jobs:
run: | run: |
wget -qO- get.nextflow.io | bash wget -qO- get.nextflow.io | bash
sudo mv nextflow /usr/local/bin/ sudo mv nextflow /usr/local/bin/
- name: Check whether profiles are all tested
run: |
python ${GITHUB_WORKSPACE}/bin/cchecker.py ${GITHUB_WORKSPACE}/nfcore_custom.config ${GITHUB_WORKSPACE}/.github/workflows/main.yml
- name: "Check profile" - name: "Check profile"
run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }} run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}