From c3fa87e4bc4954ab182850837e15c7b8e27fa2b1 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Tue, 11 Aug 2020 09:18:36 +0200
Subject: [PATCH] Add microbiome screening profile for NT sized MALT runs for
 nf-core/eager@SHH

---
 conf/pipeline/eager/shh.config | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config
index 777f516..b358712 100644
--- a/conf/pipeline/eager/shh.config
+++ b/conf/pipeline/eager/shh.config
@@ -65,6 +65,18 @@ process {
 }
 
 profiles {
+  microbiome_screening {
+    process {
+      // Assuming NCBI NT-sized DB
+      withName: malt {
+        maxRetries = 1
+        memory = 1900.GB
+        cpus = 112
+        time = 1440.h
+        queue = 'supercruncher'
+      }
+    }
+  }
   // IMPORTANT this profile is not reproducible due to hardcoded paths. For initial/automated screening ONLY.
   hops {
     params {