From c40ebb9acfa5f46b98654d3adeae5c8057d01a96 Mon Sep 17 00:00:00 2001 From: James Fellows Yates Date: Fri, 3 Jun 2022 14:21:41 +0200 Subject: [PATCH] Add overhead for get_software_versions --- conf/pipeline/eager/eva.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index f633bae..92ce500 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -192,8 +192,8 @@ process { withName:get_software_versions { cache = false clusterOptions = { "-S /bin/bash -V -l h=!(bionode06)" } - beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1 -Xmx512m"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1' - clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega())}M" } + beforeScript = 'export JAVA_TOOL_OPTIONS="-XX:ParallelGCThreads=1"; export OPENBLAS_NUM_THREADS=1; export OMP_NUM_THREADS=1' + clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toMega() * 2)}M" } errorStrategy = { task.exitStatus in [1,143,137,104,134,139,140] ? 'retry' : 'finish' } }