diff --git a/docs/seg_globe.md b/docs/seg_globe.md index 1fa832f..da03737 100644 --- a/docs/seg_globe.md +++ b/docs/seg_globe.md @@ -4,13 +4,13 @@ The profile is configured to run with Singularity version 3.6.3-1.el7 which is part of the OS installtion and does not need to be loaded as a module. -Before running the pipeline you will need to load Java and Nextflow. You can do this by including the commands below in your SLURM/sbatch script: +Before running the pipeline you will need to load Java, miniconda and Nextflow. You can do this by including the commands below in your SLURM/sbatch script: ```bash ## Load Java and Nextflow environment modules module purge module load lib -module load java/v1.8.0_202-jdk nextflow/v20.07.1.5412 +module load java/v1.8.0_202-jdk miniconda nextflow/v20.07.1.5412 ``` All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.