From 9d4d682867d67cf98f5847a7d676b82cdf9284a3 Mon Sep 17 00:00:00 2001
From: "James A. Fellows Yates" <jfy133@gmail.com>
Date: Tue, 10 Nov 2020 15:14:03 +0100
Subject: [PATCH 1/2] Update shh.config

---
 conf/shh.config | 1 -
 1 file changed, 1 deletion(-)

diff --git a/conf/shh.config b/conf/shh.config
index e0c7116..0c89be4 100644
--- a/conf/shh.config
+++ b/conf/shh.config
@@ -15,7 +15,6 @@ cleanup = true
 singularity {
     enabled = true
     autoMounts = true
-    runOptions = '-B /run/shm:/run/shm'
     cacheDir = "/projects1/singularity_scratch/cache/"
 }
 

From d70fc2605ac1dafb916d1999c95c46c9f89738a9 Mon Sep 17 00:00:00 2001
From: Andrew Frank <andrew.m.frank@gmail.com>
Date: Thu, 12 Nov 2020 11:52:58 -0500
Subject: [PATCH 2/2] Fix parameters in google.md

Change parameters from hyphens to underscores to accurately reflect google.config
---
 docs/google.md | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/docs/google.md b/docs/google.md
index 9e8c521..d488b8a 100644
--- a/docs/google.md
+++ b/docs/google.md
@@ -14,21 +14,21 @@ nextflow run nf-core/rnaseq -profile test,google --google_bucket <gs://your_buck
 
 ### Required Parameters
 
-#### `--google-bucket`
+#### `--google_bucket`
 
 The Google Cloud Storage bucket location to be used as a Nextflow work directory. Can also be specified with (`-w gs://your_bucket/work`).
 
 ### Optional Parameters
 
-#### `--google-zone`
+#### `--google_zone`
 
 The Google zone where the computation is executed in Compute Engine VMs. Multiple zones can be provided separating them by a comma. Default (`europe-west2-c`).
 
-#### `--google-preemptible`
+#### `--google_preemptible`
 
 Enables the usage of preemptible virtual machines with a retry error statergy for up to 5 retries. Default (`true`).
 
-#### `--google-debug`
+#### `--google_debug`
 
 Copies the /google debug directory from the VM to the task bucket directory. Useful for debugging. Default (`false`).