From cd6b8e0f172397fae376cb95b10a2e80b65abb09 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Mon, 17 Jan 2022 16:51:55 +0000 Subject: [PATCH] Add --nextclade_dataset params --- conf/pipeline/viralrecon/genomes.config | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index 16d2cb0..9cf864a 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -13,6 +13,7 @@ params { // Please use 'MN908947.3' if possible because all primer sets are available / have been pre-prepared relative to that assembly fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_045512.2/GCF_009858895.2_ASM985889v3_genomic.200409.gff.gz' + nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-01-05T19_54_31Z.tar.gz' nextclade_dataset_name = 'sars-cov-2' nextclade_dataset_reference = 'MN908947' nextclade_dataset_tag = '2022-01-05T19:54:31Z' @@ -20,6 +21,7 @@ params { 'MN908947.3' { fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.fna.gz' gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/nextclade_sars-cov-2_MN908947_2022-01-05T19_54_31Z.tar.gz' nextclade_dataset_name = 'sars-cov-2' nextclade_dataset_reference = 'MN908947' nextclade_dataset_tag = '2022-01-05T19:54:31Z'