From c515a401c705896cc2158ddb15846ccf279116a9 Mon Sep 17 00:00:00 2001 From: "James A. Fellows Yates" Date: Thu, 4 Feb 2021 08:06:35 +0100 Subject: [PATCH] Update shh.config --- conf/pipeline/eager/shh.config | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config index 0ff23a1..ab0d0fb 100644 --- a/conf/pipeline/eager/shh.config +++ b/conf/pipeline/eager/shh.config @@ -69,7 +69,9 @@ profiles { big_data { params { - config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs' + // Specific nf-core/configs params + config_profile_contact = 'James Fellows Yates (@jfy133)' + config_profile_description = 'nf-core/eager big-data SHH profile provided by nf-core/configs' } executor { @@ -80,7 +82,7 @@ profiles { maxRetries = 2 - withName: malt { + withName: 'malt' { maxRetries = 1 memory = { task.attempt > 1 ? 1900.GB : 725.GB } cpus = { task.attempt > 1 ? 112 : 64 } @@ -88,7 +90,7 @@ profiles { queue = { task.memory > 756.GB ? 'supercruncher' : 'long' } } - withName: hostremoval_input_fastq { + withName: 'hostremoval_input_fastq' { cpus = { check_max( 1, 'cpus' ) } memory = { check_max( 32.GB * task.attempt, 'memory' ) } time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 2.h }