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Added kraken config (#15)
* Added kraken template * docs: updated some info * fix: updated igenomes_base path
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conf/kraken.config
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conf/kraken.config
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'KRAKEN'
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config_profile_description = 'Jenkins cluster provided by nf-core/configs.'
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config_profile_contact = 'Maxime Garcia or Johannes Alneberg'
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config_profile_url = 'kraken.dyn.scilifelab.se'
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}
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process {
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executor = 'local'
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}
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docker {
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enabled = true
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mountFlags = 'z'
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fixOwnership = true
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}
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params {
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max_memory = 60.GB
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max_cpus = 16
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max_time = 72.h
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igenomes_base = '/share/igenomes/'
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}
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docs/kraken.md
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docs/kraken.md
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# nf-core/configs: KRAKEN Configuration
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This profile can be **only** combined with `jenkins.config`. It is used for
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testing pipeline with real data on **in-house** cluster located at SciLifeLab.
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To use, run the pipeline with `-profile kraken`. This will download and launch
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the [`kraken.config`](../conf/kraken.config) which has been pre-configured to
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test the pipeline using `docker` by default.
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Example: `nextflow run -profile kraken,jenkins`
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